PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016287-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 556aa    MW: 59593.9 Da    PI: 8.2885
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016287-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-052143123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   + C+ C+k F r  nL+ H r H
  NNU_016287-RA 21 FICEVCNKGFQREQNLQLHRRGH 43
                   89*******************88 PP
2zf-C2H212.60.0004297119123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k++  +s+ k H +t+
  NNU_016287-RA  97 WKCDKCSKRYAVQSDWKAHSKTC 119
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.1E-62043IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.11E-72043No hitNo description
PfamPF121712.7E-52143IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00522143IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.992143IPR007087Zinc finger, C2H2
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-485118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.11E-792117No hitNo description
SMARTSM0035514097117IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MDPDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLR QKTTKEVKRR  60
VYLCPEPTCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG  120
TREYRCDCGT LFSRRDSFIT HRAFCDALAQ ESARIPTGLS TMGSHLYGSS SVGLGLSQVG  180
SQISSLQDQN HPSSDILRLG GAGGPQFDHL IPPSNPSSFR PAQPTPSSAF FLPGSNQDFH  240
EEQQSHHGLL QNKPFHGLMQ LPDLQNNPSN SSSATAANLF NLSFFSNSST TSNNTNNNNH  300
HLSSSGLLIP EQFNGTPGGE GSSLFSGSIM GDHMGSSVPS IYNSSVQNDT GIAQMSATAL  360
LQKAAQMGST TSGNGASLLR GFASSSSSGV KSDRSHMSAN FRGSFGGGGG GENMRSQLEN  420
ENNFQDLMNS LANGGSSIFG SGSGGVPGFG GNCTSGGHEQ EASFGGFNAN RISLDQHHHS  480
TNLCNMDESK LHQNLAVSIG GSDRLTRDFL GVGGMVRSMS GGIPQREQHH GLDISSLDSE  540
MKSATSNRPF GGGNLQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270754.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_010270755.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_010270757.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9ZUL31e-130IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A061E9C80.0A0A061E9C8_THECC; Indeterminate(ID)-domain 5, putative isoform 6
STRINGVIT_01s0010g02090.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-109indeterminate(ID)-domain 5